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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35623239_35624268_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35623239 - 35624268
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGGCATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
GTTCACATATTA
Flanking Amino Acid:
ETDHKSIEDQLQPNSASGSG
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
75.7
0.58
1
69.1
41.5
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
45.4
-0.3
2
60.03
39.4

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503