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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35624445_35624993_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35624445 - 35624993
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTCACTTAAAT
Flanking Amino Acid:
VVFPHVSYKHRLQMLDHFAE
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1.2
84.1
30.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.9
0.78
0.8
84.5
30.4
Minor 5ss
39.2
-1.2
2.8
50
46.3
Minor BPS
65.2
0.56
1.6
81.39
39

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503