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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35627738_35629305_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35627738 - 35629305
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TAAATGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTGTTTAAAT
Flanking Amino Acid:
IARMAQYSFDKLKSARDVVS
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
63
0.29
1.2
57.3
46.9
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
69.5
0.69
1.8
88.96
35.8

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503