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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35629466_35631408_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35629466 - 35631408
Intron Length:
1943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATTACTAAAAA
Flanking Amino Acid:
AQDGTSPEVQTWSLHSLALI
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
83.7
0.76
0.7
80.1
32
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
55.7
0.18
1.9
71.22
40.2

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503