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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35633120_35635472_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35633120 - 35635472
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
GGTTCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTCACTCACCT
Flanking Amino Acid:
NLSSLVPSLCVHLCSSHLLL
Intron Amino Acid Position:
1073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.7
36.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
65.5
0.35
1
62.8
43.4
Minor 5ss
32.6
-2
2.7
35.6
40.5
Minor BPS
48.5
-0
2
72.08
44

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503