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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35638746_35640694_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35638746 - 35640694
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTATT
5'SS Class:
major
3'SS Sequence:
GTTCTGTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AGTTAATAAAAT
Flanking Amino Acid:
ARSARLKNPKNDFLVLHLSD
Intron Amino Acid Position:
1285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
86.5
28.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
72
0.5
1.1
75.1
38.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.5
Minor BPS
45.7
-0.2
2.1
67.23
42.5

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503