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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35643131_35645337_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35643131 - 35645337
Intron Length:
2207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGAA
5'SS Class:
major
3'SS Sequence:
CTTTGTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CAATTCTCAACT
Flanking Amino Acid:
PSDITAKACQVCSAWIGSGV
Intron Amino Acid Position:
1369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.2
60.4
40.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.6
0.64
0.9
77.7
35.8
Minor 5ss
33
-1.9
3.7
46.3
49
Minor BPS
62.9
0.48
1.6
74.11
42.4

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503