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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35648737_35651863_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35648737 - 35651863
Intron Length:
3127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTAACT
Flanking Amino Acid:
DYLQEKRNTLNEDDIEEKEN
Intron Amino Acid Position:
1686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.2
0.86
0.6
88.1
21.7
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
80.2
1.03
1.1
92.12
30.1

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503