About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35652134_35654173_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35652134 - 35654173
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTGAAATTAACT
Flanking Amino Acid:
SDLPSLCSPAGCMTVLPTIL
Intron Amino Acid Position:
1776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
82.6
0.73
0.7
81.8
30.3
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
59.3
0.37
1.9
79.43
41.9

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503