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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35654399_35656913_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35654399 - 35656913
Intron Length:
2515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
AGTCAGCTAACA
Flanking Amino Acid:
LASVLEYSQPETSKPVLDEV
Intron Amino Acid Position:
1851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
93.5
0.98
0.7
92.3
26.6
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
42.8
-0.5
2.4
58.38
40.3

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503