About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35657066_35660002_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35657066 - 35660002
Intron Length:
2937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTGACTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTTGACT
Flanking Amino Acid:
KNALNSSDPWVQAKCYQLLL
Intron Amino Acid Position:
1902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.4
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68
0.41
0.9
67.6
38.8
Minor 5ss
37.8
-1.4
3
40.6
45.1
Minor BPS
78.9
0.99
1.1
91.71
30.7

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503