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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35678207_35684616_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35678207 - 35684616
Intron Length:
6410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
KMLEYALKQERAKYHKLKYG
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.5
39.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.8
-1.4
3.1
50
46.2
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935