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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35684691_35687457_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35684691 - 35687457
Intron Length:
2767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGCTTATAAAT
Flanking Amino Acid:
GDMKPPNYDSDEGNETEIQP
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.8
0.72
0.9
73.5
41.3
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
50.4
0.09
1.7
71.17
39.6

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935