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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35687537_35689509_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35687537 - 35689509
Intron Length:
1973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTGTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
TATGCGTGAAAA
Flanking Amino Acid:
IWKQGRQLLRQYLQEVGYTD
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
82.8
0.74
0.8
76.5
32.3
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
46.4
-0.2
2.3
62.87
42.8

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935