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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35700914_35702724_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35700914 - 35702724
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
CCTCACCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTTCCTCACCT
Flanking Amino Acid:
REKTIIDTATIVRKRVLSDS
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.5
38.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.1
0.52
0.8
69.6
30.8
Minor 5ss
28.8
-2.4
3.1
36.6
41.7
Minor BPS
58.5
0.35
1.9
75.75
46.8

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935