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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35702861_35706267_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35702861 - 35706267
Intron Length:
3407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GTTTGTTTCACT
Flanking Amino Acid:
SRSSGDGTDWEKEDQCLMPE
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
73.4
0.53
0.9
73
37.1
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
56.3
0.28
2.2
80.14
42.2

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935