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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35706379_35709248_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35706379 - 35709248
Intron Length:
2870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTCTGGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
CATAAACTATTT
Flanking Amino Acid:
KERKGKKGVKRPNRSKLQDM
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.1
40.1
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
75.1
0.56
1
77.7
36.7
Minor 5ss
33.3
-1.9
3.2
36.6
41.7
Minor BPS
37.6
-0.8
2
53.1
41.5

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935