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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35717305_35717981_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35717305 - 35717981
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATAGTCAACT
Flanking Amino Acid:
VEPIYTFRAHNGPVLCVVMS
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.5
0.57
1
65.9
45.3
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
47.7
-0
2.3
71.88
44.1

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935