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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35718104_35719051_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35718104 - 35719051
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAAAT
Flanking Amino Acid:
NPNIDPYDSYDPTVLRGAFV
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.2
38.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.3
0.77
0.8
79.2
32.9
Minor 5ss
48.1
-0.2
2.5
64.1
42.5
Minor BPS
66.3
0.59
1.5
81.92
39.2

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935