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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35721574_35723913_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35721574 - 35723913
Intron Length:
2340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGAGTATGATT
Flanking Amino Acid:
ILTLESGVDTTVSSSCQINR
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
73.4
35.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
48.2
-0.2
2.4
64.5
34.6
Minor BPS
42.6
-0.5
1.9
58.21
39.3

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935