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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35724022_35725270_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35724022 - 35725270
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
RHIKFYDNNTGKLIHSMVAH
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.1
36.6
Major BPS
61.3
0.28
1
62
30.6
Major PPT
79.7
0.67
0.9
82
27.2
Minor 5ss
46
-0.4
3.2
63.9
47.7
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
STRN
Ensembl Gene ID:
ENSAPLG00000011021
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011524
35665678 - 35725612
59935