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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35739412_35740020_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35739412 - 35740020
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCATTCTTATCT
Flanking Amino Acid:
RVPAMTAHQNGVIAYSIGVA
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.1
37.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
46.6
-0.3
2.8
62.9
42.7
Minor BPS
67.7
0.63
1.6
80.16
41.9

Associated Gene:

Gene:
VIT
Ensembl Gene ID:
ENSAPLG00000011837
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012351
35739233 - 35743954
4722