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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35742569_35743093_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35742569 - 35743093
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCATCCTCAATC
Flanking Amino Acid:
IPQKGGLSNVGKALSFVNKN
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
36.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
31.7
-2.1
3.4
39.3
41.1
Minor BPS
67.2
0.52
1.5
71.53
39.9

Associated Gene:

Gene:
VIT
Ensembl Gene ID:
ENSAPLG00000011837
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012351
35739233 - 35743954
4722