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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35809359_35809430_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
35809359 - 35809430
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCAAGGAC
5'SS Class:
weak_major
3'SS Sequence:
TCAGAAAGAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTTCTCAGAAAG
Flanking Amino Acid:
IFILFHCAKEKYAAEMHPAP
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
54.5
37.2
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
40.6
-0.5
1.7
33
39
Minor 5ss
26
-2.8
3.4
32.2
36.6
Minor BPS
44.5
-0.5
1.8
51.9
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020237
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039128
35809209 - 35813674
4466