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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_358353_368872_F

Intron Information:

Intron Rank:
145691
Intron Class:
major
Intron Phase:
Intron Coordinates:
358353 - 368872
Intron Length:
10520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATGTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.3
0.91
0.6
83.6
31.5
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
56.8
0.29
1.7
72.26
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028516
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022897
358017 - 415105
57089
ENSAPLT00000045129
354435 - 381254
26820
ENSAPLT00000031650
354435 - 370218
15784