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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35862356_35865730_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35862356 - 35865730
Intron Length:
3375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCATA
5'SS Class:
major
3'SS Sequence:
TTTCATACTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATACTT
Flanking Amino Acid:
SVEDLQTLTKILHAMKEDSE
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.9
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81.6
0.71
0.8
78.6
34.2
Minor 5ss
39.2
-1.2
3
48.9
41.5
Minor BPS
56.2
0.27
1.9
78.67
37.9

Associated Gene:

Gene:
FEZ2
Ensembl Gene ID:
ENSAPLG00000012145
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012656
35862273 - 35883648
21376