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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35865807_35873334_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35865807 - 35873334
Intron Length:
7528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
TTTCATTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTGACA
Flanking Amino Acid:
KQERGHMPGTYLTTVIPYEK
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
74.9
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
1
76
37.6
Minor 5ss
39.2
-1.2
3.1
55.2
42.8
Minor BPS
65.4
0.48
1.5
77.03
33.1

Associated Gene:

Gene:
FEZ2
Ensembl Gene ID:
ENSAPLG00000012145
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012656
35862273 - 35883648
21376