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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35873604_35877048_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35873604 - 35877048
Intron Length:
3445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
GAACTATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATACGAACT
Flanking Amino Acid:
RSSTNNSYEERVKRLSVAEL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
65.9
0.36
1
58.3
41.7
Minor 5ss
35.6
-1.6
3.3
45.6
43.6
Minor BPS
47.8
-0
2
75.81
40

Associated Gene:

Gene:
FEZ2
Ensembl Gene ID:
ENSAPLG00000012145
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012656
35862273 - 35883648
21376