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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35879049_35881812_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35879049 - 35881812
Intron Length:
2764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCATGCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTTATATAACA
Flanking Amino Acid:
LPTLNLSEKGVNDNLNLDLS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
74.2
0.55
0.9
65.8
40.7
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
53.6
0.11
1.8
67.27
38.4

Associated Gene:

Gene:
FEZ2
Ensembl Gene ID:
ENSAPLG00000012145
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012656
35862273 - 35883648
21376