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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35893266_35894574_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35893266 - 35894574
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACCATTACT
Flanking Amino Acid:
SENDIIHIHRDMNHLQGEYR
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
80.8
0.69
0.9
73.7
36.9
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
62.3
0.47
2
86.62
38.5

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196