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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35894698_35895489_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35894698 - 35895489
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TCTGATTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTGATTT
Flanking Amino Acid:
VEGSCCPMCPEMYVPEPTNI
Intron Amino Acid Position:
922

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.4
42
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
0.9
72.4
37.3
Minor 5ss
35.7
-1.6
3.2
38.6
46.4
Minor BPS
55.3
0.24
1.7
77.21
39.5

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196