About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35895685_35899680_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35895685 - 35899680
Intron Length:
3996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TCTCTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
TCTCTTTCAACA
Flanking Amino Acid:
RKGQCCPYCIEDTVPKKVVC
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
59
0.22
1
66.7
30
Major PPT
80.3
0.68
0.8
77
30.3
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
59
0.28
1.5
68.33
38.3

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196