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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35901554_35903480_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35901554 - 35903480
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
CTGTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
HPGQCCPSCPDEIIVQKPEL
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
87.5
0.84
0.8
80.3
37.3
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196