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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35909355_35912945_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35909355 - 35912945
Intron Length:
3591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TTCCACCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TACAAATTAATT
Flanking Amino Acid:
VCDKYCPFGYLKNKHGCEIC
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
76.7
38.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.6
0.4
0.9
59.2
37
Minor 5ss
43.2
-0.7
3.1
65.6
39.7
Minor BPS
50.1
0.08
1.8
68.42
42

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196