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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35945702_35958272_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35945702 - 35958272
Intron Length:
12571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGAA
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CATTGCTTATTT
Flanking Amino Acid:
KCCDVFECVNEVKPTCIFNS
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.5
35.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
31.1
-2.2
3.3
36.8
42.9
Minor BPS
53.7
0.19
2
72.6
44.8

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196