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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35975972_35983805_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35975972 - 35983805
Intron Length:
7834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTAAAA
U12 Branch Point Sequence:
GTAAAAGGAACT
Flanking Amino Acid:
ECCDLYECKPVFSVDCSTVE
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
49.6
-0
1.1
57
36.4
Major PPT
79.3
0.66
0.7
77.3
24.7
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
38.7
-0.7
2.3
58.31
43.3

Associated Gene:

Gene:
CRIM1
Ensembl Gene ID:
ENSAPLG00000012340
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012896
35890128 - 36072323
182196