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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_360020_370513_R

Intron Information:

Intron Rank:
147959
Intron Class:
major
Intron Phase:
Intron Coordinates:
360020 - 370513
Intron Length:
10494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
ATCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATACATGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
71.7
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.6
0.69
0.8
73.3
36.5
Minor 5ss
49.9
-0
2.8
69.2
41.7
Minor BPS
49.6
-0
1.8
65.76
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027159
358407 - 370848
12442