Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36363966_36442484_F

Intron Information:

Intron Rank:

150427

Intron Class:

major

Intron Phase:

Intron Coordinates:

36363966 - 36442484

Intron Length:

78519

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

TATTCCACACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.6

33.8

Major BPS

68.1

0.45

58.1

38.5

Major PPT

0.74

0.8

76.3

32.4

Minor 5ss

32.5

-2

3.3

47.4

Minor BPS

46.9

-0.1

2.1

72.28

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046476

36363719 - 36445288

81570