Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36442582_36445127_F

Intron Information:

Intron Rank:

150408

Intron Class:

major

Intron Phase:

Intron Coordinates:

36442582 - 36445127

Intron Length:

2546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAAGAAG

5'SS Class:

major

3'SS Sequence:

TAATATGTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAATAT

U12 Branch Point Sequence:

GTATCCTTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

62.9

43.2

Major BPS

67.5

0.44

1.1

63.7

42.3

Major PPT

72.6

0.51

65.2

44.8

Minor 5ss

30.5

-2.2

3.1

30.7

Minor BPS

81.6

0.99

81.35

33.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029362

36418321 - 36445296

26976

ENSAPLT00000046476

36363719 - 36445288

81570

ENSAPLT00000024355

36423710 - 36445296

21587

ENSAPLT00000041789

36427131 - 36445296

18166

ENSAPLT00000020969

36437808 - 36445288

7481

ENSAPLT00000033470

36427131 - 36445288

18158

ENSAPLT00000030903

36427131 - 36445296

18166