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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36474156_36479610_R

Intron Information:

Intron Rank:
138889
Intron Class:
major
Intron Phase:
Intron Coordinates:
36474156 - 36479610
Intron Length:
5455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
TGTTCTTTCTCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
81.6
0.71
0.7
81
31
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
44.2
-0.4
3.6
70.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022214
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019958
36473952 - 36488560
14609