Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36474156_36481072_R

Intron Information:

Intron Rank:

138891

Intron Class:

major

Intron Phase:

Intron Coordinates:

36474156 - 36481072

Intron Length:

6917

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCCT

U12 Branch Point Sequence:

TGTTCTTTCTCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.8

38.3

Major BPS

37.5

-0.7

4.3

79.6

35.6

Major PPT

81.6

0.71

0.7

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

44.2

-0.4

3.6

70.66

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022214

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032933

36473952 - 36481168

7217