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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36489690_36490981_F

Intron Information:

Intron Rank:
139662
Intron Class:
major
Intron Phase:
Intron Coordinates:
36489690 - 36490981
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAA
5'SS Class:
major
3'SS Sequence:
CATATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCTGACATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
31.7
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
74.9
0.56
0.9
68.6
36.9
Minor 5ss
37.4
-1.4
3.2
48.5
47.7
Minor BPS
45
-0.3
2.1
65.44
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025070
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044541
36488562 - 36492190
3629