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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36490673_36490981_F

Intron Information:

Intron Rank:
139660
Intron Class:
major
Intron Phase:
Intron Coordinates:
36490673 - 36490981
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCCA
5'SS Class:
major
3'SS Sequence:
CATATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCTGACATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
65.4
40.1
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
74.9
0.56
0.9
68.6
36.9
Minor 5ss
37
-1.5
2.6
43.2
43.7
Minor BPS
45
-0.3
2.1
65.44
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025070
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036064
36490504 - 36492190
1687