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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3654516_3657828_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3654516 - 3657828
Intron Length:
3313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAC
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AACTGATTGATG
Flanking Amino Acid:
VGKVDVTQEPGLSGRFFVTT
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.1
35.3
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
83.7
0.76
0.7
76.7
32
Minor 5ss
42.5
-0.8
3.2
57.8
47.2
Minor BPS
44
-0.6
2
46.34
40.7

Associated Gene:

Gene:
TMX4
Ensembl Gene ID:
ENSAPLG00000012866
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013391
3649411 - 3665997
16587