Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36677563_36678339_F

Intron Information:

Intron Rank:

130145

Intron Class:

major

Intron Phase:

Intron Coordinates:

36677563 - 36678339

Intron Length:

777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGATAA

5'SS Class:

major

3'SS Sequence:

CTTTTTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TCTTTGTTAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

67.3

34.1

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

95.1

1.02

0.5

90.9

21.1

Minor 5ss

40.2

-1.1

3.1

57.2

46.9

Minor BPS

56.2

0.17

2.1

70.75

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020018

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043283

36668771 - 36678511

9741