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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3671792_3680260_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3671792 - 3680260
Intron Length:
8469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
ATTTATTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATTT
Flanking Amino Acid:
TLADNVAAFSRWKLYPRVLR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
1
77.6
40.7
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
57.5
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
HAO1
Ensembl Gene ID:
ENSAPLG00000012530
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013058
3671655 - 3699086
27432