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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36857088_36874253_R

Intron Information:

Intron Rank:
139225
Intron Class:
major
Intron Phase:
Intron Coordinates:
36857088 - 36874253
Intron Length:
17166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.9
0.56
0.9
72.6
37.6
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
47.6
-0.1
2.2
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022357
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048038
36856954 - 36874457
17504