About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_369000_370513_R

Intron Information:

Intron Rank:
147960
Intron Class:
major
Intron Phase:
Intron Coordinates:
369000 - 370513
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
CGCTTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GATTTCTTACCG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
71.7
40.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
79.2
0.66
0.8
72.7
32.1
Minor 5ss
49.9
-0
2.8
69.2
41.7
Minor BPS
61.6
0.23
1.7
64.92
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042604
368679 - 370848
2170