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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_36909050_36910261_F

Intron Information:

Intron Rank:
126508
Intron Class:
major
Intron Phase:
Intron Coordinates:
36909050 - 36910261
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
72.2
39.5
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
32.2
-2
3.3
39.4
39.8
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018166
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031516
36908123 - 36910366
2244