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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3691555_3694247_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3691555 - 3694247
Intron Length:
2693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTTCTCAGACT
Flanking Amino Acid:
RNKFQLPPHLRLKNFTSNNL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
52.1
0.15
2
77.96
38.5

Associated Gene:

Gene:
HAO1
Ensembl Gene ID:
ENSAPLG00000012530
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013058
3671655 - 3699086
27432